Resolved! STM32F401 Datasheet Error? Vih
So table 54 Vih for 5V tolerant pins is 0.7Vdd. For Vdd 3.3V this is 2.31V.I'm having input capture trigger on signals that only reach 1.8V with 100% consistency on 4 pins.Most stm32f4 the Vih for the same pins is 0.45Vdd + 0.3V, which would be 1.65V...