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CubeMX appears to corrupt project structure after first IOC file recompile on Linux?

Associate III

I have a project that was originally developed under Windows using the motor control workbench. Under Windows, I can successfully open, edit and re-compile the project IOC file (using the built-in Eclipse device configuration tool). I've transferred the project to Ubuntu 20.4 and after the initial transfer the project builds fine. However, if I open the project IOC file (using the Linux Eclipse device configuration tool), when I close and re-compile the IOC file, the project structure is damaged and specifically the content of the Drivers folder is deleted. Now the project no longer builds.

So the question is, has anyone else had the same issue and have they found a solution?