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When attempting to initialize a single GPIO EXTI as disabled, the generated code still enables the interrupt. I did notice that if I uncheck all of the EXTI lines, then none of them are enabled in the generated code. So it seems it's all or nothing. ...
I have a project configured with CubeMX that includes an RTOS. Because of RTOS, I use TIM2 as the HAL timebase. What I have observed is that STL_FullRamMarchC overwrites the htim2 structure and after interrupts are re-enabled, the HAL_TIM_IRQHandler ...