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*New* clock configuration via CubeMX vs *old* via clock configuration tool

Question asked by Mr_M_from_G on Nov 27, 2015
Latest reply on Dec 3, 2015 by Amel N
I just started a new project with STM32F207 but it should use a lot of software form an older project. Now I created a clock configuration with CubeMX and everything is different than with the old clock configuration tool. Before there was a routine in system_stm32f2xx.c called
SetSysClock which initilized what I entered in the excel sheet. Now it is not there any more and I can't even find where the clock system is initialized. There are so many routines includes into my new project.
Also other stuff is different like there is no more NVIC_Init.
Is there a documentation that explains the structure of the whole HAL and clock configuration esp. ?