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CubeMX 4.15 input capture from comparator output

Question asked by frackers on Jun 2, 2016
Latest reply on Jul 19, 2016 by STM32Cube-T
Running stm32cubemx 4.15 and STM32Cube_FW_F3_V1.5.0 HAL
I can set the output of a comparator to a timer input capture (e.g. comp1 output to timer 1 input capture 1) but I can't then set up the timer input capture without selecting an input pin (which I don't have free so I have a conflict anyway). 
Is the HAL capable of handling this scenario even if CubeMX doesn't provide the choices and how do I prevent any project updates from overwriting any changes I might make to the timer setup.